#include <vector>
#include <cmath>
#include "opencv2/core.hpp"
#include <iterator>
#include <iostream>
#include <sstream>
#include <fstream>
#include <string>
#include <cstdlib>
#include "csv_reader.h"
#include "H5Cpp.h"

Macros
#define	_USE_MATH_DEFINES

Functions
void	vectorToFile (std::vector< double > const &vec, std::string const &filename)

void	MatToFile (cv::Mat &image, std::string const &filename)

std::vector< double >	decompose_matrix (cv::Mat mat)

cv::Mat	compose_matrix (std::vector< double > parameters)

std::vector< std::size_t >	compute_sort_order (const std::vector< double > &v)

void	show_cv_matrix (cv::Mat img, std::string windowname)

void	print_cv_matrix_info (cv::Mat img, std::string imagename)

double	interpolate (const std::map< double, double > &data, double x)

herr_t	file_info (hid_t loc_id, const char name, const H5L_info_t linfo, void *opdata)

Macro Definition Documentation

#define _USE_MATH_DEFINES

Function Documentation

cv::Mat compose_matrix ( std::vector< double > parameters )

Composes 2x3 transformation matrix from shear, scale, rotation and translation parameters.

Parameters

parameters [sx, sy, shear, $\phi$ , tx, ty]

Returns: 2x3 transformation matrix

std::vector<std::size_t> compute_sort_order ( const std::vector< double > & v )

Calculates sorted index array of a given vector.

Equivalent to numpy.argsort

Parameters

v	vector to be sorted

Returns: array of indices that would sort the vector v

std::vector<double> decompose_matrix ( cv::Mat mat )

Decomposes a 2x3 affine transformation matrix into its underlying geometric components.

A transformation matrix $\begin{pmatrix} a & b & c \\ d & e & f \end{pmatrix}$ can be decomposed in rotation $\phi$ , scale in X- and Y direction $ sx, sy $ , shearing $ s $ and translation in X- and Y $ tx, ty $ .

The decomposition is not unique, there exist other decompositions. However, it seems that this particular decomposition is rather stable and for each component one gets a rather smooth function across an order.

Warning: When rotation $\phi$ is close to 0, it sometimes alters between $\pm 2\pi$ . This is a problem when trying to make a smooth spline across an order. Temporary fix is to add $2 \pi$ when values are near $-\pi$ .

Parameters

mat	2x3 transformation matrix

Returns: [sx, sy, shear, $\phi$ , tx, ty]

herr_t file_info	(	hid_t	loc_id,
		const char *	name,
		const H5L_info_t *	linfo,
		void *	opdata
	)

double interpolate	(	const std::map< double, double > &	data,
		double	x
	)

void MatToFile	(	cv::Mat &	image,
		std::string const &	filename
	)

Saves an OpenCV matrix to a text file

This function saves a cv::Mat matrix to a text file. The file is essentially a CSV file, but the matrix is 'numpy' style, which means that is begins with [ and ends with ] characters.

Parameters

image	matrix to be saved
filename	path to output file

void print_cv_matrix_info	(	cv::Mat	img,
		std::string	imagename
	)

Prints out basic information about a Matrix/Image.

Prints type, dimensions, min- and max value.

Parameters

img	Matrix/Image to be evaluated.
imagename	Name of the matrix

void show_cv_matrix	(	cv::Mat	img,
		std::string	windowname
	)

Plots an OpenCV matrix of type CV_32.

For plotting a double/float matrix, the matrix needs to be rescaled before plotted on screen.

Parameters

img	Matrix/Image to be plotted
windowname	name of the window containing the plot

void vectorToFile	(	std::vector< double > const &	vec,
		std::string const &	filename
	)

Saves vector to CSV File

This function saves a std double vector to a CSV file e.g. for easy plotting with python

Parameters

vec	vector to be saved
filename	path to output file

Macros

Functions

Macro Definition Documentation

Function Documentation